Question

Have mac OS 10.6 and have python verion 2.7 32 bit intalled as well as numpy and scipy. also have xcode version 3.2, Im really confused as to what to do at this point. I download biopython version 1.59 and tried to run the setup code in python but it wont work. what am i missing?

当我尝试在空闲中运行设置文件时, 我收到此错误消息 :

Traceback (most recent call last):
File "/Users/Cliff/Downloads/biopython-1.58/setup.py", line 379, in <module>
 Bio.PopGen : [ SimCoal/data/*.par ],
File   "/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/distutils/core.py", line    140, in setup
raise SystemExit, gen_usage(dist.script_name) + "
error: %s" % msg
SystemExit: usage: setup.py [global_opts] cmd1 [cmd1_opts] [cmd2 [cmd2_opts] ...]
or: setup.py --help [cmd1 cmd2 ...]
or: setup.py --help-commands
or: setup.py cmd --help

error: no commands supplied

Answer 1

您需要从终端. app 中运行 < code> python setup. py 安装。您应该参加一个shall, tcsh, et. shell, 而不是 Python shell 。

Answer 2

Just as an probably easier alternative: Biopython is also available via pip:

pip install biopython

或者通过生物孔达(Bioconda),

conda install biopython

仅此安装小孔达(非常容易,不要求管理权), 由< a href="https://conda.io/miniconda.html" rel=" no follown noreferrer">here 。然后根据< a href=> 添加生物孔达频道(https://bioconda.github.io/http://"rel="nofolve noreferr" >这些简单的说明。

紧紧的这两个简单的选项在 Biphython 教程中丢失了。

Answer 3

错误显示您没有为安装脚本提供命令。通常的命令是安装, 所以尝试 :

python setup.py install

无论如何,如错误所示,您可以使用:

python setup.py --help

友情链接