English 中文(简体)
How can I trim leading and trailing white space?
原标题:

I am having some trouble with leading and trailing white space in a data.frame.

For example, I look at a specific row in a data.frame based on a certain condition:

> myDummy[myDummy$country == c("Austria"),c(1,2,3:7,19)] 



[1] codeHelper     country        dummyLI    dummyLMI       dummyUMI       

[6] dummyHInonOECD dummyHIOECD    dummyOECD      

<0 rows> (or 0-length row.names)

I was wondering why I didn t get the expected output since the country Austria obviously existed in my data.frame. After looking through my code history and trying to figure out what went wrong I tried:

> myDummy[myDummy$country == c("Austria "),c(1,2,3:7,19)]
   codeHelper  country dummyLI dummyLMI dummyUMI dummyHInonOECD dummyHIOECD
18        AUT Austria        0        0        0              0           1
   dummyOECD
18         1

All I have changed in the command is an additional white space after Austria.

Further annoying problems obviously arise. For example, when I like to merge two frames based on the country column. One data.frame uses "Austria " while the other frame has "Austria". The matching doesn t work.

  1. Is there a nice way to show the white space on my screen so that I am aware of the problem?
  2. And can I remove the leading and trailing white space in R?

So far I used to write a simple Perl script which removes the whites pace, but it would be nice if I can somehow do it inside R.

最佳回答

Probably the best way is to handle the trailing white spaces when you read your data file. If you use read.csv or read.table you can set the parameterstrip.white=TRUE.

If you want to clean strings afterwards you could use one of these functions:

# Returns string without leading white space
trim.leading <- function (x)  sub("^\s+", "", x)

# Returns string without trailing white space
trim.trailing <- function (x) sub("\s+$", "", x)

# Returns string without leading or trailing white space
trim <- function (x) gsub("^\s+|\s+$", "", x)

To use one of these functions on myDummy$country:

 myDummy$country <- trim(myDummy$country)

To show the white space you could use:

 paste(myDummy$country)

which will show you the strings surrounded by quotation marks (") making white spaces easier to spot.

问题回答

As of R 3.2.0 a new function was introduced for removing leading/trailing white spaces:

trimws()

See: Remove Leading/Trailing Whitespace

To manipulate the white space, use str_trim() in the stringr package. The package has manual dated Feb 15, 2013 and is in CRAN. The function can also handle string vectors.

install.packages("stringr", dependencies=TRUE)
require(stringr)
example(str_trim)
d4$clean2<-str_trim(d4$V2)

(Credit goes to commenter: R. Cotton)

A simple function to remove leading and trailing whitespace:

trim <- function( x ) {
  gsub("(^[[:space:]]+|[[:space:]]+$)", "", x)
}

Usage:

> text = "   foo bar  baz 3 "
> trim(text)
[1] "foo bar  baz 3"

Ad 1) To see white spaces you could directly call print.data.frame with modified arguments:

print(head(iris), quote=TRUE)
#   Sepal.Length Sepal.Width Petal.Length Petal.Width  Species
# 1        "5.1"       "3.5"        "1.4"       "0.2" "setosa"
# 2        "4.9"       "3.0"        "1.4"       "0.2" "setosa"
# 3        "4.7"       "3.2"        "1.3"       "0.2" "setosa"
# 4        "4.6"       "3.1"        "1.5"       "0.2" "setosa"
# 5        "5.0"       "3.6"        "1.4"       "0.2" "setosa"
# 6        "5.4"       "3.9"        "1.7"       "0.4" "setosa"

See also ?print.data.frame for other options.

Use grep or grepl to find observations with white spaces and sub to get rid of them.

names<-c("Ganga Din	", "Shyam Lal", "Bulbul ")
grep("[[:space:]]+$", names)
[1] 1 3
grepl("[[:space:]]+$", names)
[1]  TRUE FALSE  TRUE
sub("[[:space:]]+$", "", names)
[1] "Ganga Din" "Shyam Lal" "Bulbul"

Removing leading and trailing blanks might be achieved through the trim() function from the gdata package as well:

require(gdata)
example(trim)

Usage example:

> trim("   Remove leading and trailing blanks    ")
[1] "Remove leading and trailing blanks"

I d prefer to add the answer as comment to user56 s, but I am yet unable so writing as an independent answer.

Another option is to use the stri_trim function from the stringi package which defaults to removing leading and trailing whitespace:

> x <- c("  leading space","trailing space   ")
> stri_trim(x)
[1] "leading space"  "trailing space"

For only removing leading whitespace, use stri_trim_left. For only removing trailing whitespace, use stri_trim_right. When you want to remove other leading or trailing characters, you have to specify that with pattern =.

See also ?stri_trim for more info.

Another related problem occurs if you have multiple spaces in between inputs:

> a <- "  a string         with lots   of starting, inter   mediate and trailing   whitespace     "

You can then easily split this string into "real" tokens using a regular expression to the split argument:

> strsplit(a, split=" +")
[[1]]
 [1] ""           "a"          "string"     "with"       "lots"
 [6] "of"         "starting,"  "inter"      "mediate"    "and"
[11] "trailing"   "whitespace"

Note that if there is a match at the beginning of a (non-empty) string, the first element of the output is ‘""’, but if there is a match at the end of the string, the output is the same as with the match removed.

I created a trim.strings () function to trim leading and/or trailing whitespace as:

# Arguments:    x - character vector
#            side - side(s) on which to remove whitespace 
#                   default : "both"
#                   possible values: c("both", "leading", "trailing")

trim.strings <- function(x, side = "both") { 
    if (is.na(match(side, c("both", "leading", "trailing")))) { 
      side <- "both" 
      } 
    if (side == "leading") { 
      sub("^\s+", "", x)
      } else {
        if (side == "trailing") {
          sub("\s+$", "", x)
    } else gsub("^\s+|\s+$", "", x)
    } 
} 

For illustration,

a <- c("   ABC123 456    ", " ABC123DEF          ")

# returns string without leading and trailing whitespace
trim.strings(a)
# [1] "ABC123 456" "ABC123DEF" 

# returns string without leading whitespace
trim.strings(a, side = "leading")
# [1] "ABC123 456    "      "ABC123DEF          "

# returns string without trailing whitespace
trim.strings(a, side = "trailing")
# [1] "   ABC123 456" " ABC123DEF"   

Use dplyr/tidyverse mutate_all with str_trim to trim the entire data frame:

myDummy %>%
  mutate_all(str_trim)
library(tidyverse)
set.seed(335)
df <- mtcars %>%
        rownames_to_column("car") %>%
        mutate(car = ifelse(runif(nrow(mtcars)) > 0.4, car, paste0(car, " "))) %>%
        select(car, mpg)

print(head(df), quote = T)
#>                    car    mpg
#> 1         "Mazda RX4 " "21.0"
#> 2      "Mazda RX4 Wag" "21.0"
#> 3        "Datsun 710 " "22.8"
#> 4    "Hornet 4 Drive " "21.4"
#> 5 "Hornet Sportabout " "18.7"
#> 6           "Valiant " "18.1"

df_trim <- df %>%
  mutate_all(str_trim)

print(head(df_trim), quote = T)  
#>                   car    mpg
#> 1         "Mazda RX4"   "21"
#> 2     "Mazda RX4 Wag"   "21"
#> 3        "Datsun 710" "22.8"
#> 4    "Hornet 4 Drive" "21.4"
#> 5 "Hornet Sportabout" "18.7"
#> 6           "Valiant" "18.1"

Created on 2021-05-07 by the reprex package (v0.3.0)

The best method is trimws().

The following code will apply this function to the entire dataframe.

mydataframe<- data.frame(lapply(mydataframe, trimws),stringsAsFactors = FALSE)

I tried trim(). It works well with white spaces as well as the .

x =  
              Harden, J.
               

trim(x)
myDummy[myDummy$country == "Austria "] <- "Austria"

After this, you ll need to force R not to recognize "Austria " as a level. Let s pretend you also have "USA" and "Spain" as levels:

myDummy$country = factor(myDummy$country, levels=c("Austria", "USA", "Spain"))

It is a little less intimidating than the highest voted response, but it should still work.

Benchmarking of the main approaches in this thread. This is not capturing all weird cases, but so far we are still lacking the example where str_trim removes whitespace and trimws doesn t (see Richard Telford s comment to this answer). Doesn t seem to matter - the gsub option seems to be fastest :)

x <- c(" lead", "trail ", " both ", " both and middle ", " _special")
## gsub function from https://stackoverflow.com/a/2261149/7941188 
## this is NOT the function from user Bernhard Kausler, which uses 
## a much less concise regex 
gsub_trim <- function (x) gsub("^\s+|\s+$", "", x)

res <- microbenchmark::microbenchmark(
  gsub = gsub_trim(x),
  ## https://stackoverflow.com/a/30210713/7941188
  trimws = trimws(x),
  ## https://stackoverflow.com/a/15007398/7941188
  str_trim = stringr::str_trim(x),
  times = 10^5
)
res
#> Unit: microseconds
#>      expr    min     lq      mean median       uq       max neval cld
#>      gsub 20.201 22.788  31.43943 24.654  28.4115  5303.741 1e+05 a  
#>    trimws 38.204 41.980  61.92218 44.420  51.1810 40363.860 1e+05  b 
#>  str_trim 88.672 92.347 116.59186 94.542 105.2800 13618.673 1e+05   c
ggplot2::autoplot(res)

sessionInfo()
#> R version 4.0.3 (2020-10-10)
#> Platform: x86_64-apple-darwin17.0 (64-bit)
#> Running under: macOS Big Sur 10.16
#> 
#> locale:
#> [1] en_GB.UTF-8/en_GB.UTF-8/en_GB.UTF-8/C/en_GB.UTF-8/en_GB.UTF-8
#> 
#> attached base packages:
#> [1] stats     graphics  grDevices utils     datasets  methods   base     
#> 
#> loaded via a namespace (and not attached):
#>  stringr_1.4.0  





相关问题
How to plot fitted model over observed time series

This is a really really simple question to which I seem to be entirely unable to get a solution. I would like to do a scatter plot of an observed time series in R, and over this I want to plot the ...

REvolution for R

since the latest Ubuntu release (karmic koala), I noticed that the internal R package advertises on start-up the REvolution package. It seems to be a library collection for high-performance matrix ...

R - capturing elements of R output into text files

I am trying to run an analysis by invoking R through the command line as follows: R --no-save < SampleProgram.R > SampleProgram.opt For example, consider the simple R program below: mydata =...

R statistical package: wrapping GOFrame objects

I m trying to generate GOFrame objects to generate a gene ontology mapping in R for unsupported organisms (see http://www.bioconductor.org/packages/release/bioc/vignettes/GOstats/inst/doc/...

Changing the order of dodged bars in ggplot2 barplot

I have a dataframe df.all and I m plotting it in a bar plot with ggplot2 using the code below. I d like to make it so that the order of the dodged bars is flipped. That is, so that the bars labeled "...

Strange error when using sparse matrices and glmnet

I m getting a weird error when training a glmnet regression. invalid class "dgCMatrix" object: length(Dimnames[[2]]) must match Dim[2] It only happens occasionally, and perhaps only under larger ...

Generating non-duplicate combination pairs in R

Sorry for the non-descriptive title but I don t know whether there s a word for what I m trying to achieve. Let s assume that I have a list of names of different classes like c( 1 , 2 , 3 , 4 ) ...

Per panel smoothing in ggplot2

I m plotting a group of curves, using facet in ggplot2. I d like to have a smoother applied to plots where there are enough points to smooth, but not on plots with very few points. In particular I d ...

热门标签