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Fetching genomic序列 Effective in ́?
原标题:Fetching genomic sequence efficiently in Python?

我怎么能有效地利用沙捞? 例如,从F.文档或其他一些容易获得的格式来看? 我基本上想要一个接合点——seq(chrom, st, 开始, 结束),它将恢复特定圈子上特定群的顺序[起步,结束]。

简言之,是否有一个方案用餐接口,以接收孤儿 评分?

感谢。

最佳回答
问题回答

查阅biopython,支持几种基因序列格式。 具体来说,它支持FASTA和GenBankfile,以指夫妇。

pyfasta是你重新研究的单元。 说明

fast, memory-eff, pythonic (andtor-line) access tospea序列 file

https://github.com/brentp/pyfasta





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