English 中文(简体)
自动更新从R-forge安装的程序包
原标题:Automatically update packages installed from R-forge
  • 时间:2010-10-19 19:11:00
  •  标签:
  • r
  • r-forge

我最近从R-2.11.1安装了R-2.12.0,并通过以下方式更新了所有CRAN软件包:

update.packages(checkBuilt=TRUE, ask=FALSE)

现在我想更新我从R-forge安装的所有软件包,但只有当它们在CRAN上不可用时。换句话说,我不能简单地运行:

update.packages(checkBuilt=TRUE, ask=FALSE, repos="http://r-forge.r-project.org")

因为它将在R-2.12.0附带的版本上安装生存包的R-forge版本。

我可能可以使用old.packagespackageStatus中的一些信息组合来确定哪些包只存在于R-forge上,但我想问在构建自定义解决方案之前是否有更简单的方法。

最佳回答

这个怎么样:

# 1. Get the list of packages you have installed, 
#    use priority to exclude base and recommended packages.
#    that may have been distributed with R.
pkgList <- installed.packages(priority= NA )[, Package ]

# 2. Find out which packages are on CRAN and R-Forge.  Because
#    of R-Forge build capacity is currently limiting the number of
#    binaries available, it is queried for source packages only.
CRANpkgs <- available.packages(
  contriburl=contrib.url( http://cran.r-project.org ))[, Package ]
forgePkgs <- available.packages(
  contriburl=contrib.url( http://r-forge.r-project.org , type= source )
)[, Package ]

# 3. Calculate the set of packages which are installed on your machine,
#    not on CRAN but also present on R-Force.
pkgsToUp <- intersect(setdiff(pkgList, CRANpkgs), forgePkgs)

# 4. Update the packages, using oldPkgs to restrict the list considered.
update.packages(checkBuilt=TRUE, ask=FALSE,
  repos="http://r-forge.r-project.org",
  oldPkgs=pkgsToUp)

# 5. Profit?
问题回答

暂无回答




相关问题
How to plot fitted model over observed time series

This is a really really simple question to which I seem to be entirely unable to get a solution. I would like to do a scatter plot of an observed time series in R, and over this I want to plot the ...

REvolution for R

since the latest Ubuntu release (karmic koala), I noticed that the internal R package advertises on start-up the REvolution package. It seems to be a library collection for high-performance matrix ...

R - capturing elements of R output into text files

I am trying to run an analysis by invoking R through the command line as follows: R --no-save < SampleProgram.R > SampleProgram.opt For example, consider the simple R program below: mydata =...

R statistical package: wrapping GOFrame objects

I m trying to generate GOFrame objects to generate a gene ontology mapping in R for unsupported organisms (see http://www.bioconductor.org/packages/release/bioc/vignettes/GOstats/inst/doc/...

Changing the order of dodged bars in ggplot2 barplot

I have a dataframe df.all and I m plotting it in a bar plot with ggplot2 using the code below. I d like to make it so that the order of the dodged bars is flipped. That is, so that the bars labeled "...

Strange error when using sparse matrices and glmnet

I m getting a weird error when training a glmnet regression. invalid class "dgCMatrix" object: length(Dimnames[[2]]) must match Dim[2] It only happens occasionally, and perhaps only under larger ...

Generating non-duplicate combination pairs in R

Sorry for the non-descriptive title but I don t know whether there s a word for what I m trying to achieve. Let s assume that I have a list of names of different classes like c( 1 , 2 , 3 , 4 ) ...

Per panel smoothing in ggplot2

I m plotting a group of curves, using facet in ggplot2. I d like to have a smoother applied to plots where there are enough points to smooth, but not on plots with very few points. In particular I d ...

热门标签